You need to surf another forum... I'd suggest
GM-Diesel.com Information, and discussion, related to General Motors line of diesel engines, including the new Duramax, and other diesels in general. as a good start. I've seen this discussion there before. Most of the discussion will be geared toward running 6.2L heads on a newer, turbocharged 6.5L. I was looking into it because I thought I had a set of heads from a 6.2 that were good, but they ended up being cracked too, so my '96 got new heads. Probably from china.
To sum up what I recall, you'll have the following issues:
No oil supply for the turbo on a turbo 6.5L.
Need a spacer for the alt brackets sometimes, depending on the year of the 6.2L heads, alt configuration, etc...
Both those issues are likely not an issue on a truck that originally had 6.2L heads, and doesn't have a oil feed for a turbo. The combustion prechambers are actually better on the 6.2's for a non-turbo applications, for mileage at least, but probably not for mileage at 2600 rpm's... Some of the guys getting really good mileage with 6.5's were running 6.2 cups for prechambers, and there were certain years that were deemed better than others.
There were some injector differences too, and I think the really early heads were not desirable for that reason... Might have been '82 only. Again, in your case, your question is more along the lines of can a 6.5L block be run inside the guts of a military 6.2L, and the answer is a definite YES.
C