You can go to any truck parts place, many Napa's that deal in truck stuff, Fleet Pride, most truck dealers, or any other miscellaneous places that have Muncie stuff. I don't have the part number in front of me, but it's the short stud kit for a six bolt PTO. If any of those places don't have it, they can get it in short order.
I havn't read into the TMs to see what's supposed to be there, but coarse thread bolts tend to vibrate loose. Not to say that they all do, but they have a good propensity for it.. The stud kit when propelry installed will all but eliminate this. It also makes hanging the PTO and the required gaskets much easier.
Silicone on those little thin paper shim/gasket pieces usually causes more leaks than it fixes...