The glow plugs are a fairly heavy drain. Check this video out:
http://youtu.be/MTkOl947aTk (Thanks again to Antennaclimber)
Automotive electrical and charging systems can be daunting until you understand them. The CUCV's hybridized 12/24 volt system adds some additional potential for confusion until you get familiar with it.
To keep things somewhat simple, electrical loads in a vehicle periodically exceed the capability of the charging system. In these cases the batteries act as a sort of buffer, helping to smooth out the load.
Now consider your specific situation. It is Winter and cold. You have just put an initial drain on your batteries by running a longer GP cycle (until wait light goes out) and then start a cold diesel engine. It is often stated that running the starter is the single biggest load you can place on your batteries. And, your batteries are cold as well, which reduces their output. All of this happens before your alternators are spinning and charging.
So, now your engine is running and the GP's cycle on. You hear the clunk of the relay which completes the circuit through your GP's to provide that afterglow heat to help warm up your engine (and reduce emissions). That additional drain can show up on your voltmeter. Now, we also know your front battery has been compromised. It is either on it's way out or not getting charged (or a combination).
I intentionally simplified some of the explanations here.
Take your time and follow the steps in the TM's. They are logically laid out, and intended to eliminate the most likely causes first and to help narrow down to the root cause of your issue(s). Some people print the pages out and mark them up as they go. Use highlighters, especially on the schematics (The wiring diagrams near the end of the TM's).
Most of what you will be dealing with is direct current. Just think of the electricity kind of like water flowing through a copper pipe. It helps to view the flow starting at the positive post of your battery. But, unlike water which will flow out of a broken pipe, the electricity must flow back to the negative post of the battery or nothing happens. You also need to know that your front battery's negative post is connected directly to "ground", which is your truck body/frame, the engine block, etc.
So, again, go step by step, tell us what you did and what you found. If you get stuck, just ask. We all started out not knowing this stuff.
Simple stuff first, you can get your drivers side alternator tested (which feeds your front battery) free at most local parts monkey stores. You can also get your battery tested. I would consider starting with these items.
Other suggestions most welcome.