I got a real lecture over in San Antonio from a great (but expensive) shop when I had my injector pump rebuilt, concerning the problems with 'non petroleum' diesel fuel, such as biodesel. I am no chemist, but the info was not good for biodesel. In a nutshell, and this all according to the shop, biodiesel tends to trap moisture and suspend, or emulsify it. Oil, petroleum diesel, and Dinosaur fuel may trap moisture, but it does not suspend it. It gets removed by our first water trap. It is the centriguge effect of a water separator. Emulsify (or suspend) water within a fuel and a water separator has a harder time trying to remove it. A water separator, a good one, likes a glob of water and it can get it.
Anyway, in the same lecture, I learned that if moisture works it's way info the fuel, and gets into the IP, and gets injected into the combustion chamber, this is bad. The moisture acts like a kernel of popcorn, pops, and can damage injector tips, or worse. This is not so pronounced on our multifuel engines, as they are robust, but still? The lecture was rounded out by the maestro telling me that most of these issues are becoming very prevalent in the common rail engines in new production pickup trucks and what not. Water getting past them is actually blowing off injector tips, with obvious results (holes in pistons). My point in posting this is to just relate what I learned, so that the information might be translated to ?????? And oh did I pay for the IP rebuild. So I pass on the info.