I did the upgrade back in September. You will need to make some decisions:
Oil drain location
CDRV connections
Turbo exhaust routing
Get an EGT and boost gauge if you aren't going to do head studs
Be careful with getting the old exhaust manifold bolts off, i sprayed mine 1-2 times per day (after driving the truck) for a week and didnt have a problem. Go slow with loosening them, you dont want to snap one in the block. Also, go buy new bolts for the exhaust manifolds.
You will either need to put new short injectors on or use two exhaust manifold gaskets on the turbo side because the manifold will not clear the stock injectors with just one gasket. Also, don't bother pulling the driver side exhaust manifold because the one of a 6.5 will not work because the exhaust outlet basically sits right next to the oil lines going to the cooler and you wont be able to get the crossover on. I ended up getting an exhaust shop to put together a crossover for me.
I put an electric fuel pump on and pulled the mechanical lift pump so i could put the oil drain into the block where the mechanical lift pump goes. I used this block off plate because it came with a connection ready to go for the drain line, no fabbing needed (because i didnt have the tools to do it).
http://www.summitracing.com/parts/mor-65397/overview/
I also had to put both batteries up front to have enough room for the turbo, as mentioned above. As acmunro mentioned, go ahead and do a rebuild on the turbo. It is easy to do and not very expensive.
I am sure there is more i am not thinking about, but if you have other questions throw them out there. Also here are a few pics of what mine looked like after it was done.