I have finally finished putting everything back together. No more bubbles in the coolant. The coolant temperature no longer wanders up and down either. It seems to run good and it sounds ok to me. Thanks for all the advice from members here, it made a difference as this is my first diesel to work on and I did not know the best way to go about working with the injection system, the glow plugs, or the 24 volt system.
Now I can replace the windshield wiper motor and get the state inspection done. Then on to many other small things that need to be done.