Jeepsinker,
This might help for future issues. I made my own bio-diesel for about 3 years out of waste veggie oil. I had to "cook" it in a hot water tank, add a mixture of methanol and lye, and let it settle. After draining off the glycerin, I would pump it into a 55 gallon drum for washing. After washing with a mister spraying water on the top of the "fuel" for a few hours, I would pump it into another 55 gallon drum for drying. This is where you might benefit next time.
In order to dry the fuel (get all of the water out of it), I put a bubbler (copper ring with tiny holes drilled in it) in the bottom of the barrel with minimal air pressure coming through. Then I pumped the fuel out of the bottom of the barrel, and back into the top of the same barrel, making sure that the nozzle pointed at the inside wall to create some splash. After pumping for 2 to 3 hours, the fuel came out clear and completely "dried". This might be a possibility for you to try if you run into this problem again.
Thanks,
Bo