Alright haven't updated in a while so here we go. Brakes are doing much better it stops in a straight line, just a little vibration from the warped rotor. It is skipping second gear and going straight into third, not sure if its a vacuum issue or a shift solenoid. I can put it in first and bump it up a gear as I take off, Not wanting that to be a long term solution though. If there wasn't more important issues I'd take on the nv4500 swap.
Drove it for the whole weekend, ran great Friday and Saturday, Sunday not so much. Went out to start it and in a effort to not annoy my neighbors I was trying to start it quietly, Should have just gone for it because after running for a few seconds it would not start at all. Tried retarding the injector pump but that didn't help.
Killed the battery and at that point I said forget it and used the Towbaru as it's now called to get it back to the farm.
I'll pull the batteries and charge them, It will probably start fine.