Howdy,
It sounds like you jumped the gun way to fast and did not want to listen to what was needed to be done.
I specifically asked if it was properly primed after the fuel filters were changed. You could very easily had a air pocket which would not be vacated since you had it running. It was using that fuel and working, but, not filling the filters completely.
MEP generators are different. You actually leave it on prime a long time after filter changes. The fuel filters will fill, and any excess will then be returned to the tank via the fuel return lines. The same thing applies to starting sequence. You turn it to prime and run... wait... turn to start, hold it there... wait, oil pressure it up, now release it. The starter actually disengages after it starts and you are then flashing the field.
A diesel mechanic with no experience with a military diesel generator would not know these nuances.
So, it sounds like you have finally gotten all the fuel lines and filters filled with diesel. Since it has been sitting, you should also look at a additive to assist in cleaning the injectors.
The MEP-8xx units do not like to run with no load. The work best with a 70% load or higher. There is a wet stacking concern with no-load, or low load operation.
Start on this thread
MEP-802/803 Filters and Parts the 2nd post has quick links to other important stuff. Farther along are links to the manuals. Farther along the thread are added updates to important stuff. (yours was reset, so it should have the fuse mod)