My trans only seems to have a synchro on second and third. First will grind, 4th and 5th will grind. I don't even use the clutch anymore on those as they like to be dropped in at a "sweet spot" that I know of. I do know that a normal deuce is able to use the clutch when changing gears so long as the transmission is fine. I wouldn't thing a gear in the transmission would create much a vibration when missing a few teeth. After re-reading that, I once had a Honda 50 small dirt bike. The chain popped off one time and locked down the drivetrain. I suppose it lost a tooth or 2 in first gear. It would tap like crazy in first but in second or third, it was quiet as could be.