I had driven the truck for tens of thousands of miles, and yet the water pump broke enough to be a detectable leak a few hours after being overheated so bad steam was blowing out of all the coolant hoses. You're saying that's a coincidence?
If that was the only issue, maybe, maybe not. But in the larger context of your alternator and fan issues, I would flip that question back to you that you would think it's a coincidence that some of the issues were related to overheating, but others (e.g. alternator bracket) were not? Driving 10,000 miles doesn't really matter... people always opine "But yesterday it was working fine!"... that's just how many things fail - they're fine, until they aren't.
This is all just odds - statistics. You might be the outlier, but when there are several accounts from several sources that have unusually similar patterns of failure, the likelihood that they share a cause is very high.
Also, I read the report. Michegin Scientific. They didn't mention anything about accessories on the engine cracking, or the water pump. They did mention of course the flywheel but we all knew that. If you have another report that says water pump covers crack, I would love to read it.
There are several reports. I'm pretty sure somewhere in this chain all of them were linked, and at one point I even quoted directly from it. Yes, the military report that I'm referring to goes through the exact failure process that both you and I have had (e.g. water pump, alternator bracket, etc.). If it wasn't in this post, it has been discussed in several others (like the one titled something like "Help! My new LMTV is blowing water pumps and breaking alternators"), which are also linked to, with the names of the reports to google, in my "Common Issues" document in my signature.
And I offered a reasonable alternative view of events. The cover is bolted to the housing by what, six, or seven bolts or whatever. They are made out of different materials. When one is rapidly heated or cooled they are going to expand and contract at different rates and something is going to crack - related to the idea of why bridges have expansion joints. The rapid heating that accompanies a boil-over sure qualifies in my mind.
That's not really how that works. You're mixing the ideas of thermal cycling and thermal expansion. The aluminum does have a smaller (about 1/2) Coefficient of Thermal Expansion than steel in the bolts (i.e. the cover will grow more while the bolts grow less, as temp increases, so stress will increase with temperature), but the differences we're talking about here are very small (e.g. maybe a thousandth), partly because the "overheating" we're talking about is only maybe a 25-degree change from a more normal "acceptable" temp that wouldn't be expected to cause any issues. And even then, a crack is not the likely failure (cracks are usually fatigue failures). Most likely would be that you would rip out the threads in the aluminum or stretch the bolts beyond their yield point (and then it would leak after it cooled and bolts were "too long").